NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211734_11350999

Scaffold Ga0211734_11350999


Overview

Basic Information
Taxon OID3300020159 Open in IMG/M
Scaffold IDGa0211734_11350999 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)908
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000258Metagenome / Metatranscriptome1443Y
F036144Metagenome / Metatranscriptome170Y

Sequences

Protein IDFamilyRBSSequence
Ga0211734_113509992F036144N/AMPKGASVTVKRPGGSAARNQFTLAHSRFFSGNLVNDSIKRSGFQKLFNSSITKALRVPSNIKKVQYSFSANTIRSQADSALTLSFGGAM
Ga0211734_113509993F000258GGAGGVTANYKLDAMLELRKYLWKELYTRDIFDENDYWSDNLNENVIPIIPVQQAPELNQFLSGKKHIVYDKIGMSYEDNWLICCEQILFTVYSTSVADINEIRNYMTDEFRRMDESARDINRWTGLSDKFKFHSVYIADISPTAPSEE
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