NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211733_10255284

Scaffold Ga0211733_10255284


Overview

Basic Information
Taxon OID3300020160 Open in IMG/M
Scaffold IDGa0211733_10255284 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2400
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001055Metagenome / Metatranscriptome791Y
F001298Metagenome / Metatranscriptome727Y
F092032Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0211733_102552842F092032AGGAGMSEVNEGVVCLYGIGLGQVASLFVQGYSVSSGFNNTGTVVDEQGVTRTVRYDDRRTEITVDGVAKLTSVPQLGAAFTFTAKTASAYPAGSASVSFNGVVTKVDDRGSSKGFVTVTVTAESYEGITY
Ga0211733_102552843F001055N/AMPFTKSIRHIVEGTLATYLTSQAGLAGVVILTGDSAVTQTLPKAVVLCDSARAPGDLQEGLGNYDCSVRVTLFSNADDTTLAVHRERCAALSDCMKSVGLIQTAFASGGAALCYDVTYRSEDEGIDERSWATSFSFDILTCLNPAA
Ga0211733_102552845F001298N/AEFLPDAKEMIADFGVAGSANSGAITFKCLISDPAVQTVLEPGGYMERTQYNVRLPAATAAWSLPDGSTGASSAIIVSGSPIPSLAQGKKIVAGGKTVRVTTQTYKPGSAWVTLVVIDDNQ
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