NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211733_10891105

Scaffold Ga0211733_10891105


Overview

Basic Information
Taxon OID3300020160 Open in IMG/M
Scaffold IDGa0211733_10891105 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18643
Total Scaffold Genes42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)36 (85.71%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001094Metagenome / Metatranscriptome780Y
F009331Metagenome / Metatranscriptome319Y
F075715Metagenome118N
F093236Metagenome106Y
F093237Metagenome106Y
F100350Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0211733_1089110512F001094AGAAGGMNAKMKSMLATYLRAGVASVIALYLAGVTDPKALATAGIAAIAGPLLKALDPKATEFGRGAK
Ga0211733_1089110524F009331AGAAGGMICENCIKAGEENSLNHLKRAAHWHEKCEGCVCQHKTGQGWVKVEGVPTPLMQTQSP
Ga0211733_1089110529F100350AGGCGGMIYAFKCECGSTREIEQSIHAEILEPMCTDCHSSMSRVWSSPAVTFKGPGFYSNGG
Ga0211733_1089110530F093236GGAGGVRTKHLSLVTSVPSVTMGSKEIVPSPFGPVRAGLTTSQTTPDQRLLELLSSLESVVESLNYKSFTLYDMLNTAIEEISAVLSATLTKEDGIEDMIE
Ga0211733_1089110533F075715AGGAGMNKEYLIAKADLCKDLAIEQLTAGDSEEGVKNLKRMIRALEEINMINYLERRGER
Ga0211733_1089110538F093237GAGGMKYKYDLGDTATMSHREMLDALLAKEVAPRTIVGTGYKNGRQVAIDYLKEMIAKEREGK
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Institute for Fundamental Biomedical Research
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