NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211733_10984886

Scaffold Ga0211733_10984886


Overview

Basic Information
Taxon OID3300020160 Open in IMG/M
Scaffold IDGa0211733_10984886 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)65610
Total Scaffold Genes86 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (12.79%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009684Metagenome314Y
F019105Metagenome231Y
F035632Metagenome / Metatranscriptome171Y
F070887Metagenome122N

Sequences

Protein IDFamilyRBSSequence
Ga0211733_1098488657F070887N/ALSFSQSRYPLQTVIDGDSVVILTKAQADTINSIFENQKARIARFKSDVKTKDSIISVRDTVLMFYSQQVVQYRNVIDLQIVREDKLDTIRQWLQKRAIEGAWIYYSYINNEIVAVDLSDYVVRKDDYTGDIMFYKRTEDCPDDNKQKEPPVGWHYDVVKPKRPKLNIFKL
Ga0211733_1098488658F019105N/AMKRKLIIVGSLFIILVVTQVFSSGHGHVVVVEDNIQLTGENKKLTTANKKLTNSVNELKADKENLQDMVSEVIGDLDSTKSVVKDIKKELDNEKDIVRSQSTGKQFEFQPITLPTSDGN
Ga0211733_1098488666F009684N/AMNIFKLNYENEQQGLDDLKSKGIFVETEGIDGNVYLAYGEGVQAVVNIGKIMIVPPVMDGMEIVTPPVYADGYHYDVMSSETYDFGANLVEPKNPKHAFAGHATTEEFPYEPMVQIEE
Ga0211733_1098488679F035632N/AMEKFLSIPVTNEQRQLVSATGIVLIEQESTTTLHIHYKASTATDVVVITHATAPAGDESMRDAIQNALVNALQTSWTNVAYQVTNLPFAVSGITVQ
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