NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211733_11184400

Scaffold Ga0211733_11184400


Overview

Basic Information
Taxon OID3300020160 Open in IMG/M
Scaffold IDGa0211733_11184400 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5468
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (16.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000957Metagenome / Metatranscriptome821Y
F001923Metagenome / Metatranscriptome617Y
F003583Metagenome / Metatranscriptome478Y
F014261Metagenome264Y
F053888Metagenome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0211733_1118440012F014261N/AMKSLIAVSFLIIFGWLAVVTFCGPELARAINGPEPVKAKVTHRRAR
Ga0211733_1118440015F003583GGAMAKAPSQESGSANLLLAVCLLTAFAGLTAFSSAYIAGYVLDQLQSTDALVMIVTDAGLRSDSKDLEANMSAATLALKSVRDLGWALAVGCLGVGVAVFVRSRRQNA
Ga0211733_1118440016F001923N/AMSPSPPIDPESIPKELKDGVVASVLGGLAMTARLLMSTTPVSAGWVIRRVLAAGITSCLAGYAIAEHIQSPGLRMGAIGAIGYCAPEALDYLLKAFKARAEKEVGAIAGKKPNGKSTKPGKRKR
Ga0211733_111844006F000957N/AMSAFQHLDGMTALLSELYEVNERVLTGDIMSAKAAIASPRMPKLIRHYHEALSEDGAQAIYLEPFVAAGGWVGLTYSYTLPDGFTVSGSVTPRRV
Ga0211733_111844009F053888N/AMNQEPTDTVLIGDRPLRLSRPVLPHAARRLASVFPQLNALNIAGKSQADAAFALGVSVGAIRTWINLTDMTWTNLKRRGPYKTKA
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