NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211726_10213905

Scaffold Ga0211726_10213905


Overview

Basic Information
Taxon OID3300020161 Open in IMG/M
Scaffold IDGa0211726_10213905 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2424
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)14 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000141Metagenome / Metatranscriptome1941Y
F004279Metagenome / Metatranscriptome445Y
F006539Metagenome / Metatranscriptome370Y
F059944Metagenome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0211726_102139052F006539AGGMIETTAPWLVLYSVFGYFIVWGVYSTIKDNAFQAGYWKGRKDGFDMHRRMTDNKTNVDNY
Ga0211726_102139056F004279AGAAGGVGFIEVRNGSGFTLRMENDNESLNPSMDRCVSCNDDRLLHDGQYLVCTQCHCRQ
Ga0211726_102139057F059944AGGMMDSIWSVLNVIADNKEGDFITCMRNLSVMDVSVRLSSYG
Ga0211726_102139058F000141GGAMHAQFKCNGCKRKTEFLWLEQLDTPEGFKAYQCMDCGCVGVKNIAEALHIPDSNLDRCKQCGGWQFLGSGCHTCALIGAK
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