NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211726_10232973

Scaffold Ga0211726_10232973


Overview

Basic Information
Taxon OID3300020161 Open in IMG/M
Scaffold IDGa0211726_10232973 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16932
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (18.75%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)14 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F059904Metagenome133Y
F073559Metagenome / Metatranscriptome120N

Sequences

Protein IDFamilyRBSSequence
Ga0211726_1023297316F073559N/AEKISLKLFEFYNLDAELNGLTNQQTGEKIASGLIQEKLSLVTKYWLTDLGKKVAAEKASVEELKNDLIKKYGKEDDKGGVSIPMVIDQVDADGAVVYTEPDAEGKTSPKKMINPDYQSFEKEFNNLLQTEKELEYKVFTLDDFEKVETSENYGTFFKLVKVEETKVVPLN
Ga0211726_102329733F059904GGAGMSLSTTIKLPTYSCKIIVRIVDSVCDEAGKIYKKYKIKEDFGGEAEGAVIMPDIDVYYLLLGSSYLTHNTIAHELFHAVVRVTEDRGVADEEAQAWLAGHLTAVIYKFLEKKKLDIKHG
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