NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211726_10237644

Scaffold Ga0211726_10237644


Overview

Basic Information
Taxon OID3300020161 Open in IMG/M
Scaffold IDGa0211726_10237644 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3704
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)14 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002269Metagenome / Metatranscriptome576Y
F015095Metagenome / Metatranscriptome257Y
F029049Metagenome / Metatranscriptome189Y
F066777Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0211726_102376442F002269AGGAGMKEQAIAAAKSYGRASLASVAALYMSGITDPKVLANAFIAGLIGPLLKALQPSEKQLGVGSK
Ga0211726_102376443F015095AGGAMERAQLVVGIALGSFTILGLGAGLVRHLVKYYLSELKHDNNGGHNLAGRVERIEQRVDRIYEILLEDRLAK
Ga0211726_102376448F066777AGGAMGELTFIKDGLATTIHDNGDMTVVNAKRCDQCDQWQTALGGFSYRDVSGEVVMWLCAQCR
Ga0211726_102376449F029049GAGGVVMCTMSRVAKVILDRSQEITAHRVGLERTIIRNADPTDASNFGQAYKNWHELVWQESEGAAAEMAVANYFGDYGFIPAIDNAHDTADVGENIEVKWTKHANGHLIVQNRGPGRPNDVAILVTGFSPVYVLLGWMPVHMAKQPRYKHTYQDNYWVPRANRFEMQYLKRSNYGDV
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