NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211726_10400491

Scaffold Ga0211726_10400491


Overview

Basic Information
Taxon OID3300020161 Open in IMG/M
Scaffold IDGa0211726_10400491 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5227
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)14 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001055Metagenome / Metatranscriptome791Y
F001725Metagenome / Metatranscriptome645Y
F012666Metagenome / Metatranscriptome278Y

Sequences

Protein IDFamilyRBSSequence
Ga0211726_104004916F001725N/AMCAAISNGTSCLYAIQGTVANLFVQSYSLSSSFNSDAMVVDETGITKTHRMDDRKSEITIEGIAKTSTMPVLGATISFTVNTLSAYPSGSASASFAGVITKIDDKGSNKGFTSVSITAVDFEGITYA
Ga0211726_104004917F001055AGGMGTKSIRHIVESTVATYLSTQTGLTTITFLTGDSNATQTLPKAVVICDSARAPNDLPEGLGNYDCSVRITVFSNADDTTLADHRARCAALSGNMRDLTSIQAAFVATGDATCYDVTIGSEDEGIDERSWATSFSFDLLVVLPPA
Ga0211726_104004919F012666N/AVRLPAVTASWTKPDGSTGASAAIIASGAVIPSLAQGKKIVAGGKTVRITTQTYKPGSAWVTLVVIDDNQ
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