NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211726_10499372

Scaffold Ga0211726_10499372


Overview

Basic Information
Taxon OID3300020161 Open in IMG/M
Scaffold IDGa0211726_10499372 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28390
Total Scaffold Genes42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)35 (83.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)14 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003640Metagenome / Metatranscriptome475Y
F024254Metagenome206Y
F030983Metagenome183Y
F039599Metagenome / Metatranscriptome163Y
F077007Metagenome / Metatranscriptome117N

Sequences

Protein IDFamilyRBSSequence
Ga0211726_1049937214F039599AGGAGMLSEETVKQIFFQSDRPRKDPLIADEVDIVQFAHNIEAYVAVECARKEHARCVEIVKDMNRNVGEALENQRPE
Ga0211726_1049937216F077007GGAMRLMRNQHATHVDFFQFKGLIETNPKATPCNIDMVFERKCKFFVGEWKREGEGMSQGQGLLLRNLARQPQFTVVIIQGNTDGETVVEKFEQLCSDGRFRVRGKSFDDLKKFVTRWYNWADAQEFQ
Ga0211726_104993723F003640GAGMALAVVYDPRYHDFQSWACLMCEAYAGQQLAIPNQQTDWKEWASGLKAIDVFTNEGIPGPYIFENWQDWAMALVGAVNQPTQELAT
Ga0211726_1049937238F030983N/AMTKEVELSIKTEHGVRVSISEWDDGGAWLHLQGRHSTMSSVLTRDEAQQLLAGLQAILAKEETA
Ga0211726_104993724F024254AGGAMNFLDIFNYVAKVARPAHAKQVIAESMEDVFAEIGLDSLDGLVMLMYFDELYGIDDAVSKEWTPKSVQEIHDLIMANKTKEPTSMEEVAEVCK
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