NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211726_10504005

Scaffold Ga0211726_10504005


Overview

Basic Information
Taxon OID3300020161 Open in IMG/M
Scaffold IDGa0211726_10504005 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20450
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (59.26%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)14 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005589Metagenome395Y
F029104Metagenome189Y
F105191Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0211726_1050400510F029104GGAMKSSFKEFLNKIGFDDPSEYDFDADKSIDPNIKETIKNINKSTWCWTLFSCEGHNHDDNSQSLPYFVFIVKKKFIPVLLGMLFNTLGAKINQITDFPLCNTDGLNVSWGFTDDKYAIVSAHWAHNYLEEEELHKKLLADLYDMSFKILEAKL
Ga0211726_105040054F105191N/AMFKVSFEKEKNKMKKFLVSIVALLASTSSFAADPIFGAKPPVKKSGVDFTSQSVGVQLQDNKFFVNYANDGKDWFTITNPGKTIPNVENYAGGLLKGARFVSVVATNGVETRVSYGFEKQLVKFDVPVVGTNATVMGQVFPTGFGGGSLNSLNLSRNWAWGVRIGFDVSKMKLPKLF
Ga0211726_105040058F005589N/AMAKYKHSFFRYVPSTEKYKSEFKFVESIESDSDSVPEFHDHYCIDHVFDLETGQMRVKNHSAPEYCVSKYVGWSLSLPPVEKTNKQEVYVVIHRSSFSHKKIEFDEFLEPKDKRYSQEEFQWLLSIIEKKFDKQKEWAKKGIRTPSQYEDGTQVFKTEEEFRAFSLGRRAYFLYQLVNSHKFIHLVRRLNIGYTGQC
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Institute for Fundamental Biomedical Research
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