NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211726_10556471

Scaffold Ga0211726_10556471


Overview

Basic Information
Taxon OID3300020161 Open in IMG/M
Scaffold IDGa0211726_10556471 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2679
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED203(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)14 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004111Metagenome / Metatranscriptome452Y
F011150Metagenome / Metatranscriptome294Y
F013409Metagenome / Metatranscriptome271N

Sequences

Protein IDFamilyRBSSequence
Ga0211726_105564715F004111N/AMKEKIKQVNDLCAANGMYVNQHGKKTVSAWSKIKYFRQVFGTEFGINCVMQEHSDRYVIMKCIITKCDPEHIIATGYSKQFRDKPGYLEIAETFAITRALSFMGILLEDVTSKEEYEELEIPVQPVNIKGTSSANIRYDESTINELIKKVHYAPHTAKLDFLWRANRELIDQIKIKDLATYNSILNKFNSKRDEITTQNEV
Ga0211726_105564716F013409N/AMKIIIVLIMMNGTVYNIGFNLEHYDARSCDKLFDSVTYKGKSNGKNRYGTFYKSKEVFAYSCTVEKTTKGNNERKNKTS
Ga0211726_105564717F011150AGGMDINYYHKQHDKIKQQFRHDIIMRKLKEKEDKEFKNMFIKIFLIIVVALLLLTLIAK
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Biomedical Sciences Research Center "Alexander Fleming"
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