NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211726_10587064

Scaffold Ga0211726_10587064


Overview

Basic Information
Taxon OID3300020161 Open in IMG/M
Scaffold IDGa0211726_10587064 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4399
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (27.27%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)14 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001754Metagenome / Metatranscriptome641Y
F009073Metagenome / Metatranscriptome323Y
F009333Metagenome / Metatranscriptome319Y
F042337Metagenome158Y
F048784Metagenome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0211726_105870641F042337AGGMELVIEGLDKLILYTYVQRKISDIRVDNKGVSRDASYVFTFPPIDSEIDGWRNKMEVYLCKFPTSNGVYELFVMGLHGVTCSYLDLKQIRDIDIFQCHFIST
Ga0211726_1058706410F048784N/AMNTNEMNEKLVSVFSQDELAALMTAVAGYVNVKRKQGRSTGIECVVFNKVTDALLLSNYLNAVEVDVKPGRVGVAEYKMAEAMEMA
Ga0211726_1058706411F001754N/AMSTISNPFKNFAASKLSNNPKFEVLVSYTDFLGTKHNIVCKTRKKLVEANQFLKMFKTESVSINKILGEYPVVMGEYPKKYHSEIKRELAAAGFSTVSNFLIK
Ga0211726_105870646F009333N/AMSYVRFNRHQTFNREMMTYHSDTLRAVEDFYMDQNESWFNDVYNMLCGVWDGYLYTDLLESAKQLGLPTHITNRIEYTINFIQK
Ga0211726_105870648F009073N/AMKNYQIILTSVLSFGVAISILNGTAQQYVTFAGELNELGCTTIALTMGVLSLYALDWKGFFQYLIK
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