NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211726_10602991

Scaffold Ga0211726_10602991


Overview

Basic Information
Taxon OID3300020161 Open in IMG/M
Scaffold IDGa0211726_10602991 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9066
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (68.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)14 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001354Metagenome / Metatranscriptome716Y
F050225Metagenome145N
F072117Metagenome121N
F077041Metagenome117N
F085148Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0211726_1060299111F085148N/AMSSYKQKIEYLAQSYIAIAKRTRNWDRVKELIECNKDTEESVKQRIKELLRKK
Ga0211726_1060299115F072117AGGAGMSEIESQTNDLLQLQGELERIFTVLEGGIDLSKEQIDLLRYGCGFAPVNRQRDFLQGVFNDLNPYGRTQ
Ga0211726_1060299121F050225AGGAGMLKSEKDAELFYKAQRKFTDRQRMLDKGWGDLEAYKRLREAEKKKERIESIRMFFWGGVAAVLFCVVFFGTNYLMHGYAI
Ga0211726_1060299125F001354N/AKTTDATVVTIFKVNPLFGTRVQYRAYTKTGRDKTNDGLDVGLFTSNQSNNQDVVALMAGDIPCGSYKAAQSEIGLWYIEKGMTFGCRISVPPDPSRFIGQITVGWDNPPAELEQAKAMLFIAATMLSRSKK
Ga0211726_106029918F077041AGGAMIVLCDEFAVLKKLIRMYDDALKVNNPIQMMEIAVDIAESAEKLEQHSVDHANLSE
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Biomedical Sciences Research Center "Alexander Fleming"
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