NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211726_10928846

Scaffold Ga0211726_10928846


Overview

Basic Information
Taxon OID3300020161 Open in IMG/M
Scaffold IDGa0211726_10928846 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2744
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)14 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001280Metagenome / Metatranscriptome732Y
F006846Metagenome / Metatranscriptome363Y
F026561Metagenome / Metatranscriptome197Y
F028166Metagenome / Metatranscriptome192Y

Sequences

Protein IDFamilyRBSSequence
Ga0211726_109288462F028166AGGAGMTDGINLTGFNELKPAGTNNLDLNPTGQAPDSAFPATDKSTQDGSGLGNGGK
Ga0211726_109288463F001280GGCGGMCIECGCESLGSETGIVPVTVTDVSRDGESGLTFEMTSTPEQTRQFINE
Ga0211726_109288464F026561N/AMSNFTKDDGTGMTPPPAAGSASGAVTSRDATRKHPKQGGIKPRMKIDVNSHGIRRETSLDPKPKKTRPKKV
Ga0211726_109288466F006846GAGMRPKRLREAIEAVVHENDELLRILSEYKEEEPTNLTWSEGDRWYGWTYNNNAKRYYFDDIGNESLMGLWEDQWAREEAEAK
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