NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211726_10980175

Scaffold Ga0211726_10980175


Overview

Basic Information
Taxon OID3300020161 Open in IMG/M
Scaffold IDGa0211726_10980175 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1737
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)14 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002738Metagenome / Metatranscriptome533Y
F013517Metagenome / Metatranscriptome270Y
F015987Metagenome / Metatranscriptome250Y
F043890Metagenome / Metatranscriptome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0211726_109801752F043890N/AMQKTSSWATCNPNSIEKLQINCIDEEDGSMTIHIEWDENDPDLQWWTDLGPEGQETFMIDALQQACDCYVD
Ga0211726_109801753F002738N/AMHSNKLVIAMSIDTYGLPSEEYEEFFEDNIRFAAQLYLKTCNIISAEGAGSVDFKTVLDMYQETVYATNDDCRKYQKANNPEAIKDTDLFGIYPSREDMMEEIKAVSAKVEALTDYLGELVKVTTKGLNGIAENLVD
Ga0211726_109801754F013517N/AMFESLFAAVLPVMKDLLWAAAGMLLTYALNKFQTQFN
Ga0211726_109801755F015987N/AMTQLTQAKLKDLNVLKLYKHYDALEKSLPLLTPQSEEMVKAELEACANLRSEKVDAIYYAIASHEDALERIKKEGDHITQAKRHHESQLRSLKGLLNYLRRVLPLDSNKITGRNYQFTLVRKKELTVEVTTDPEFWHT

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