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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020161 Open in IMG/M |
| Scaffold ID | Ga0211726_10985198 Open in IMG/M |
| Source Dataset Name | Freshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | SciLifeLab |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2002 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Armatimonadia → Armatimonadales → Armatimonadaceae → Armatimonas → Armatimonas rosea | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Erken, Sweden | |||||||
| Coordinates | Lat. (o) | 59.83763399 | Long. (o) | 18.6203826 | Alt. (m) | Depth (m) | 14 to 20 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F082697 | Metagenome / Metatranscriptome | 113 | N |
| F088907 | Metagenome | 109 | N |
| F093860 | Metagenome | 106 | N |
| F099291 | Metagenome | 103 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0211726_109851981 | F093860 | N/A | MAKHIVFQPVDLESDDSIKETVLWAASFQIHPDIEPTLPEEMLALVKNKSLISYPLAYWESEFSKLGFELDIDFPYCKEFVWDFILPDAVRITIKAKDINTNYNQIIVPKPLAKKLLDEMNLPLFGKMHPEKFHNKLIAYIDISQDSYDMEEKIFEVLTELEDLCSECVSYESFIEWKVS |
| Ga0211726_109851982 | F088907 | GGAG | MSHFYRQRSYTFNETDEMLTEIKKEMSNFLTKEEAELIINRRNAMIDPAPYRMNDEIKVLHKEIDDLRREIYFLRTQLNKIQSKFDIDEPTL |
| Ga0211726_109851983 | F099291 | N/A | VKKFFTLLSILLICSCSFAQSNITMELKDAPVRTSLEMIFKQAGIKSYVIDNNVYGVISMNLSDQPFENALKLIMRANTVPLTYTKENDVYIVKARSVTPIPQTGGPDPIPTNLKNNTSWEKIPLTFIDPFDLQGVFGNILFMNQFGRYTNNSRGSGRNF |
| Ga0211726_109851985 | F082697 | N/A | MNYEDLDEEQQLELQKQFEENRKIILAMDPEAFLERLVKMHDSTDVILEGYDLVTNIGEGHGIAVAGLIRLRNALMDSIEWITSNLIAADEDEEEE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |