NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211726_11041567

Scaffold Ga0211726_11041567


Overview

Basic Information
Taxon OID3300020161 Open in IMG/M
Scaffold IDGa0211726_11041567 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)57831
Total Scaffold Genes113 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)74 (65.49%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)14 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001443Metagenome / Metatranscriptome693Y
F012023Metagenome / Metatranscriptome284Y
F016501Metagenome / Metatranscriptome246Y
F023522Metagenome209Y
F043787Metagenome / Metatranscriptome155Y
F066485Metagenome / Metatranscriptome126Y
F093347Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0211726_11041567102F001443AGGAMPMYETTVRTPQGEEKKRIYADTQQEAKKLFEQLYGGPRAVPYIPHIIPS
Ga0211726_1104156727F016501GGCGGMRFFEFTGDDTGDRLVMILRNYIGRAASKKSSAKLNWSGLDKILSTNGFELAADYETFKAIYDGSPTIQALVKNFNADGIELNVPGAEEPGDATEPTPNGGKDSEEAIAKMAASAAPAQVAQNQTTPQI
Ga0211726_110415673F093347AGGAGGMKQKKLITELYQACFDHNAKKMAELKKLEFQKILKRKAEGKHFTHRWTIVQI
Ga0211726_1104156781F043787N/AMAVKTASIREILATRARTTYAYRIDFETIGYETLPRMTEWCEYNCEDLWRCQSNHALYFQFAEERDAMMFMLKWGGAEGNRLK
Ga0211726_1104156785F023522GAGGMSSTPYELRTTTLFRAIKAEEDLKVDDRLMDLLESYTMIILPDNDFSEKLTWCLEHCQNKFRDLSVNNGRAWYFQNEQDASMFAMKWS
Ga0211726_1104156789F066485AGGAMKIGFSLGRCIRDIFNGSVDINDVAFIITATSIHEREQLDNVILMYTGEPNYLLNCDYQQCLEIAQQLWDSNRLLQPRRQGLRRHAQPENSVWVDMFPTELSNNESVKKAWDGYRFMLHMTENVDNEAMETFK
Ga0211726_1104156793F012023AGGMKEINYLKLNERIVEQAYETAFGEITQEQLQKLIQDKFERARIYREALEKSPTFSVN
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