NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211735_10028551

Scaffold Ga0211735_10028551


Overview

Basic Information
Taxon OID3300020162 Open in IMG/M
Scaffold IDGa0211735_10028551 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_201 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1979
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)8 to 14
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021773Metagenome / Metatranscriptome217Y
F039135Metagenome164Y

Sequences

Protein IDFamilyRBSSequence
Ga0211735_100285511F039135N/AMKYLKKYISFKESVLVDLSVQTMVDILESLTIWHDALLEAIGAEEVDMFDTFKLPLEDYKDKLDLDYLEDNVEFINSLSSIALKKSEVKLSDDFQTFLNKPCRFMFIYGIDKNELENPSYLIFQSWNETLNKWEDVKLYKINGDVQKFYDKLTSRTIELVDGDENYIYNVTN
Ga0211735_100285512F021773N/AMKWLRKFELFKESKAYSNKNLISEMCVSMLLINNTFLDNILDKGLKARYNENSQVFLTDLKNLIIAKNRFKLGKFEDKQCVEDNETSKINLAFEGIKFDIEKDWNYLVNARTIARNIIDKLLPEGKLESDNIKAVYWIGPNKDDEHEEDIVVELRDGQQFSFFLNKNLSASKSASFNTFAEDLIGQDLDLLFTEEYLVKWNKLTQEWIRILYDNANKDIQFHIEKFIDPKRIDSIGYFDYFDIRHGDLKYKHLGEFFKVFDKNILKFQDLLLEIWKNRDTCFMDPERVYQEWEEVKIVVLNSKILENLLTTSLKSNFPDDIKKLDDGFKLAEGTVKMKLFKTLVEKMGCLERPTYYLGQNGNIFNLIPERQFFRDNYDDLTIKFDYHVNFKVSEEEENNDFKIKINLLLDDEKLVDMDIVIRMTSEMSGRLTAKYKFDISSHFNYLVSLKRGVTQEDEEQEDDIQNDIE
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Biomedical Sciences Research Center "Alexander Fleming"
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