NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211735_10463063

Scaffold Ga0211735_10463063


Overview

Basic Information
Taxon OID3300020162 Open in IMG/M
Scaffold IDGa0211735_10463063 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_201 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3087
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)8 to 14
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F000450Metagenome / Metatranscriptome1126Y
F007470Metagenome / Metatranscriptome350Y

Sequences

Protein IDFamilyRBSSequence
Ga0211735_104630631F000450AGGCGGMGDRANFGFVQPNGNTIVLYGHWAGHNMLAQLAEAAIKAQGRWSDPSYATRITISNMIGEGWAMETGWGLHVNEIGDNEHKIPVIDFQQQTFSLHEEAPYADLSNKVRGMKNEAMFTQD
Ga0211735_104630633F007470N/AMFRTMSQQDIQGDKMDYKDGFEDGVKFAREVIILNLRSWAEATTDDGQVMDDIADRLEFGKVDYDL
Ga0211735_104630634F000311AGGMEMAYWDAQMIGLDPTALSPLTFNIGTGSIEKVSKIRDKHNLIESYVSDYEPTGYTRR
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