NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211735_10570861

Scaffold Ga0211735_10570861


Overview

Basic Information
Taxon OID3300020162 Open in IMG/M
Scaffold IDGa0211735_10570861 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_201 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3395
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)8 to 14
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001731Metagenome644Y
F009883Metagenome / Metatranscriptome311Y

Sequences

Protein IDFamilyRBSSequence
Ga0211735_105708611F001731N/AIELQDSTATFVPIFGGSVVEVGIAVAEVGSVDYAQRISIIALGALSRLPKALTDGVLSQDFDGDQILTILTDLLVNSWNEVPAALQWQTYDPTTTWANAENSGLGEIDTPGSFELAQRSSSRTDVYSLVSALATSGLGYIYESATGQISYASADHRSIYLATNGYVDLTAKQAIAPGLSIQQRAGDVRNDITIKYGQNSNSETSATDAESIAIFGQLSQIFTTTIKHQADAEDQADFYLALRSYPEFNFNDFTFELTNPELDDVDRDALINIFMGMPTRITDLPLNMAGGTYLGFVEGWTWRAAYNSVSVSAIISPLSFSLQAMQWQDVPIAEAWNTISGGLIWADALVVA
Ga0211735_105708616F009883GGAGMNEISIVIFMVIAGFLWAVMAYSVGFREGQRQGYTRGRAVSRHISQLEK
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