NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211735_10641743

Scaffold Ga0211735_10641743


Overview

Basic Information
Taxon OID3300020162 Open in IMG/M
Scaffold IDGa0211735_10641743 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_201 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27499
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (25.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)8 to 14
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039637Metagenome / Metatranscriptome163N
F054031Metagenome / Metatranscriptome140Y
F057377Metagenome / Metatranscriptome136N
F071229Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0211735_1064174312F039637N/AMKKNTDTIDELETDDEALREAGMREGTRKASKWKMRPCVPGTISIIRSNMLEKRDEFWFVAAFAFVHIAPLEDVLAVDNDAIAFNRAVRHWQLDNLDSIAAQDELSAIVGAAWNRVNAAETKAQHQSPGSTTSGK
Ga0211735_1064174313F057377N/AMKSVFSTRDIKLAAILCTLGFEFESPSSPASRIRRESGEESTVFHFISKSPTGQIADEVMRSFSEGADFVAAAPESPLAYMLAVLRNRDSLVAVIKSTPRQIVFERNGKIISISEDATEADKKRFAKFI
Ga0211735_1064174335F071229AGGAGGMSDTTAIVAACLVMMSLYTTFQLGIECERERARKARRRRFEEDQE
Ga0211735_1064174336F054031N/AIAADRDRAEALPESAWTTETPETEAAVAASGTAYGIPLRECSRRLERQRNALHDLLARRSSK
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