NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211735_10925000

Scaffold Ga0211735_10925000


Overview

Basic Information
Taxon OID3300020162 Open in IMG/M
Scaffold IDGa0211735_10925000 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_201 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)36820
Total Scaffold Genes52 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)8 to 14
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018370Metagenome / Metatranscriptome235Y
F031102Metagenome / Metatranscriptome183Y

Sequences

Protein IDFamilyRBSSequence
Ga0211735_1092500016F018370N/AMNIHILWCTIRPTEFQSAHSEWLKRADNPENIQTYVAVNWKEHADELREYLSKNFLITLNTNKIGVCYPSYQLSSNLGIKMGKCEDNDIVVFASDDFMAPQGWDTYLKNKLESKGDVGLMVRDGYQLPDSSNMLHAAITIPIMTYGCLRKMNGIIYHPAYNHMFSDCELYNNLKDLNLLYDDRLNDETMFEHLHYAAGKRAADQADQAYNSKWGEDDLTWKKRQSMTVEERILV
Ga0211735_1092500037F031102GGAMKEVIKQKYGESEKGIKGASASKRATKKVEKKETGKYVTKIVDGVKYMVLK
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