NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206125_10000940

Scaffold Ga0206125_10000940


Overview

Basic Information
Taxon OID3300020165 Open in IMG/M
Scaffold IDGa0206125_10000940 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)36374
Total Scaffold Genes51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (54.90%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000499Metagenome / Metatranscriptome1074Y
F000902Metagenome / Metatranscriptome844Y
F001746Metagenome / Metatranscriptome643Y

Sequences

Protein IDFamilyRBSSequence
Ga0206125_1000094015F000499GGAMCILIDESRRILPTFNATAELHKIQNDMCLAGSWIDHMPVGTIVETVPQASIMKLQEDALPEYRRLAANLIDRFIDEFEAQGGRRIEITEKFERMYKWKQ
Ga0206125_1000094019F001746N/AMRKNHNKLYYGKYRHKTVFRLPGSLMFYPTTDEHLLHIQKEYQNAPDMCHLASFIMANRRNVKFRMQDRKTIFYSNLDKSQELIERFWDFWIGSETVDPKFKDLGKDTVGCTRLPHGKYQYQVYLKKDAQVLMTDAQKKNLWEFLKRNVDNCLVTNYNIIDFLEDKSPYCFGGYFYVKEEKYLTPIYMLAQQAIEKVIQFRKVKNGSNKKTTR
Ga0206125_1000094039F000902N/AMTKIHTCYVCKKTFTNAIYWYDSIHDSKYDKRLIKPFCGPPCANKFREISDENSYPAREKPWPRGPEWQIIQDIDYIQYESD
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Institute for Fundamental Biomedical Research
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