NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206125_10003703

Scaffold Ga0206125_10003703


Overview

Basic Information
Taxon OID3300020165 Open in IMG/M
Scaffold IDGa0206125_10003703 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14279
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (66.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000464Metagenome / Metatranscriptome1105Y
F010001Metagenome / Metatranscriptome310Y
F020386Metagenome / Metatranscriptome224Y
F022908Metagenome / Metatranscriptome212Y
F025320Metagenome / Metatranscriptome202Y

Sequences

Protein IDFamilyRBSSequence
Ga0206125_1000370320F000464N/AMYSHHDNDLDFEDEFWPIIGILLAILGAWTGFIHLIDYLTIDAIPWWVEPFTITPVIFLLIMKEHYDSLNPLHWWPMFWGYEAKLPDEDRITIRPLDTERIMDEHGGRLNVYIVDYEHIKFRRKKDAVIFGLRYF
Ga0206125_1000370321F010001AGAAGMQDKASKDEVRLLMAQIGNLEVQVADYQQIVKELSDKLSVYEKKYGTVFVSSRNTSDQK
Ga0206125_100037036F022908GAGMPTHLQEAIKIILSADSKLRDKTPRIYAMPKDEHMPKAFTNLKRMRYLSHDLCAGRNIKRWLWRDYNPEIILQQPPFDRYEDQSEIFTLIRHPEERWWSGIKDMFYFMPWYGWWVNDKIMEQWPHFGRGTLRYHDIMQDIKPQHLIKCDAGLNDRMINFAKTHGLLCYGNIPHEKALRHSKPDIKSLEDKGVRELKAWLRENPDRQKQLDDYLAPDWQYWEKVEYQD
Ga0206125_100037037F025320AGGAGMTTKVNPTKANTTDHLSGKTITAVTVDFAVNGTDFSDTEMGPLGAVQLAIANLSQIGTPLIITKLRSDGSNDGQVFDIIWEGEFGTDTYDGSNSETLAAYLQTELRLLTSVGAGPVNLNSATVVAATAASF
Ga0206125_100037038F020386AGGAGMPISRNNFTALPVEAEQEGVDVSFFTVDFINAMNSETGDPQADSTAAGLALVQAAIMNLGINILATGPLGNSNTELTYMVRADSLDVANHITANGIRDAIRAVDTNGRAASATPRNTANISAATVTAKDVYIAV
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