NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206125_10005955

Scaffold Ga0206125_10005955


Overview

Basic Information
Taxon OID3300020165 Open in IMG/M
Scaffold IDGa0206125_10005955 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10067
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (30.77%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004640Metagenome429Y
F015084Metagenome / Metatranscriptome257Y

Sequences

Protein IDFamilyRBSSequence
Ga0206125_100059556F015084GAGMADKMKVEGLDELIKQVQRIGEFPKVMAKELRKSNRDIGRMASRRIKPQIPRSGKDFKVYEGTPGPGRAKKGEGKVRMTIPSGTLRRSIGVRNSRGSRINVFVGPRRGGAERNDGWFAGIVDDGHIGGRNKSINSSNYNKIAPALARLRPAMERLMIIKYRQVFNKFKL
Ga0206125_100059558F004640N/AMSTVYLPVTARLNLTSEQRAKGISRELYNLKLPKHLHEPGRTTTMLLATIEHPETGEWACVGDTELAIAVHPERDLNALVALFPQLTTEERSAMTYYIATSDVVLFQYLMPTDSEVLTQEQAQEAGWFGAEL
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