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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020165 Open in IMG/M |
| Scaffold ID | Ga0206125_10006422 Open in IMG/M |
| Source Dataset Name | Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 9500 |
| Total Scaffold Genes | 22 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (18.18%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Atlantic Ocean: North Sea, Helgoland | |||||||
| Coordinates | Lat. (o) | 54.1841 | Long. (o) | 7.9 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F043289 | Metagenome / Metatranscriptome | 156 | Y |
| F044789 | Metagenome / Metatranscriptome | 154 | Y |
| F057993 | Metagenome / Metatranscriptome | 135 | Y |
| F102835 | Metagenome / Metatranscriptome | 101 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0206125_1000642216 | F102835 | N/A | MKVKIKAELDDEAFKTGEFIQELSKIQDQYLDKLVAKIKKEKWIEGMDYEEIRDWLFDYFFNGWNNDKDGFEDTFTECIDKCSKYEVE |
| Ga0206125_1000642217 | F043289 | N/A | MKITIEHYEEKVTYESKHDSMGMTVLTEKLYGLCVAAGYHPDSVGKCFFEKGREMTEHLYPDDKMEEEDAMCYLGKGETISILSRYNEERKFTIIAKDCIEYSFKDDGHVGCSRNDDGSLHSVDPSGGPYIAVGTNLGDVHKDLDGLIVTKIKADTDKVGTYYLTVKDYGYKAPAWVN |
| Ga0206125_1000642220 | F057993 | N/A | MMRYNDVEFKPATENRHAEIVAWTYNEELDKESCITLCWIMGDHEGYYMKTVGDRYVEYEDMEALNHVAKYAMRSLNVQFEFEEKL |
| Ga0206125_1000642221 | F044789 | AGGA | MNANIRAILGLDEPPPREVTRNRKGVMSYSSKDAGCIQLFTNDSWERNKKYYVPNGPRSCVKNFMRG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |