Scaffold Ga0206125

Basic Information
Taxon OID	3300020165 Open in IMG/M
Scaffold ID	Ga0206125_10008113 Open in IMG/M
Source Dataset Name	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020165 Open in IMG/M

Scaffold ID

Ga0206125_10008113 Open in IMG/M

Source Dataset Name

Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8006
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (23.53%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

8006

Total Scaffold Genes

17 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (23.53%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Atlantic Ocean: North Sea, Helgoland
Coordinates	Lat. (^o)	54.1841	Long. (^o)	7.9	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Atlantic Ocean: North Sea, Helgoland

Coordinates

Lat. (^o)

54.1841

Long. (^o)

7.9

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005132	Metagenome / Metatranscriptome	411	Y
F008384	Metagenome	334	Y
F013231	Metagenome / Metatranscriptome	273	Y
F016593	Metagenome / Metatranscriptome	246	Y
F024348	Metagenome / Metatranscriptome	206	Y
F052949	Metagenome / Metatranscriptome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206125_1000811313	F005132	N/A	MVDVIFIDDNYLYQNFPLPKRMDRGALLALIQLEQYTSIQDLLGTCLYEDIETKVLAETLNVAEQGLFKLVKYTLAMYSAKAAISILRTATATTKAEEQKQDQYILDTISTTVDSKLSYINKRITNYILDNAAIKAIATADGCDNDLFDEEDTYQGDVFYPQDGIIYKSCEDGGVSYNP
Ga0206125_1000811315	F016593	N/A	MKRLKTGVVNTLSFVKLSSFTVNSFDVTLDKVVGTGSLTITNLTDLNNLDSCKDFIQINIDLLSNDIEGGEYELTITNSGDSYKYLTEVQDYTVTQTGTGIYGSTVRFTDL
Ga0206125_1000811316	F052949	N/A	MKGNIYISVPASDITNELPAAITRYDWTENTYNEEGEVESTTNHHPTWEQFGERNSGLFGSPVSVADVVVYEMEASWLDSEVSALIALGDGQSAPNYTVYTNAEVRTFIAENTPAEL
Ga0206125_100081132	F013231	N/A	MINQKNYQTCKLIKNRIDLYLYEMARLFTNIGTDSTVEQIQDAYRREREYIELIAELDPDKADRLRSSY
Ga0206125_100081133	F024348	N/A	MLSNKYYEDLTDAEANLILDIYRVIDELVYFGEPVTLVRLGFELGIKPDELSDYLAIIVTILNKVEEEYAEIRQGSN
Ga0206125_100081134	F008384	GAGG	MPRYDKALIEREAILSVQQGKITNELGKFILQRSIEVASSAFVTSGNKELKQALIDAAVMRTCEKFLHYYQSGKSAANLVISIIYSTMTNKIVSLNHSDVYGQNIKGYLTFIEDGKAVTKLKRYIKDDYLSEKL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0206125_10008113

Overview

Ecosystem & Geography

Associated Families

Sequences