NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206125_10010390

Scaffold Ga0206125_10010390


Overview

Basic Information
Taxon OID3300020165 Open in IMG/M
Scaffold IDGa0206125_10010390 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6637
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (95.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019141Metagenome / Metatranscriptome231Y
F027157Metagenome195Y
F029431Metagenome188Y
F033429Metagenome / Metatranscriptome177N

Sequences

Protein IDFamilyRBSSequence
Ga0206125_1001039012F029431AGGTGGMNSAKRKQLKLKARRELCQDMAVSVFGWSVVILGAAVTAKFMYVALVYIMLF
Ga0206125_100103902F019141GGAGGMSKIKEELIGYEQNDWISNDDHVRVDEVTEYLLYAMSVSEMQQVAKQHIQHDLYTMARSDFEKVHYDTIGVHTK
Ga0206125_100103905F033429AGAAGGMITDNTTENDLLAETIEGLGQSLTELQQIIDNLKIGVNYVEEREES
Ga0206125_100103908F027157GAGGMTYAEFKKEHDKLVTDIIFTESKQSDTLVERLERLRLDNEKHFNQLWADL
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