NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206125_10010454

Scaffold Ga0206125_10010454


Overview

Basic Information
Taxon OID3300020165 Open in IMG/M
Scaffold IDGa0206125_10010454 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6605
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008785Metagenome / Metatranscriptome328N
F008851Metagenome / Metatranscriptome327Y
F038710Metagenome / Metatranscriptome165Y
F075329Metagenome / Metatranscriptome119N

Sequences

Protein IDFamilyRBSSequence
Ga0206125_1001045410F038710AGGAMNLRELVRRLEKIEDKLRKNNDEDTLEMINKLIEDLIEDDMKAEKAFRKEVKEFIDKTIEEKVVEEAMYSGSIAQA
Ga0206125_1001045412F008785GGAGMMKKRLQIGKLMKGDKRLDGETFVEYKERLKLEKSLLNDYGKGVYISPEQHQQDVIKKRLDN
Ga0206125_100104543F075329GAGGMNNRGFSDYEKYLLVSEHSKWALGTYPNFLKLKEVMSTLNQMVSKNNNTYTYYGEVYVSNLTAPEINKIQECLDTGKWTSQFEKLKHVCVDLGIVRF
Ga0206125_100104546F008851AGTAGGMKKYKVIENYSTTNGTLYRGEVLKEDNNNTLEGHKRLRDNMGRVWFLPHKHIVRI
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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