NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206125_10011091

Scaffold Ga0206125_10011091


Overview

Basic Information
Taxon OID3300020165 Open in IMG/M
Scaffold IDGa0206125_10011091 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6323
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (58.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000464Metagenome / Metatranscriptome1105Y
F010001Metagenome / Metatranscriptome310Y
F090989Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0206125_100110911F090989N/AVDANSTVDNPVQNAGTVPIVHVKSAMPGPNSFWVLYGQHTKPTYLEDAGNGQQAQRDAALQYIKQWRVCL
Ga0206125_100110916F000464N/AMRLYSHAPGPHDHDSDFEDEFWPIMGILFAIICVWTGIVHFIDWATLNVIPWWAEPFTIAPVVFLLIMKEKYDSLNPLHWWPMFWGYQAKLPDEDRITIRPTDVERIMQQHGGPINVHIIDFEHIKFRRKKDAVIFGLRYF
Ga0206125_100110917F010001AGGMARENNVKLLKAQIGNLEVQVADYQQIVKELSDKLKLYEQKHGTVFKRSRNISNQR
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