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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020165 Open in IMG/M |
| Scaffold ID | Ga0206125_10015928 Open in IMG/M |
| Source Dataset Name | Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4794 |
| Total Scaffold Genes | 8 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (62.50%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Atlantic Ocean: North Sea, Helgoland | |||||||
| Coordinates | Lat. (o) | 54.1841 | Long. (o) | 7.9 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002093 | Metagenome / Metatranscriptome | 594 | Y |
| F005720 | Metagenome / Metatranscriptome | 392 | Y |
| F049044 | Metagenome / Metatranscriptome | 147 | N |
| F051469 | Metagenome | 144 | Y |
| F073442 | Metagenome | 120 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0206125_100159282 | F051469 | AGGAG | MIEKFTVEIEVGDRVEMGRMHLANQTVKAIEIDKWGHPVMVLSSGRKRGLFNMRLKKLIPEDVKRVQEPAEVMMTKEQWAEAQAKIDKAKAE |
| Ga0206125_100159283 | F005720 | AGGAG | MATSNATANMCRRQAFTGKGITFIEMMFDDEMVTTSTTPDTKDSVFNAMSKLVGTFGTIIAQSYALGCKATEKDAALATSIVEDELCDYYTFAVEGTPGQFNAADSAGDINADPDQANASDPGVIADAEADIEVEILARISENDSAGGVHVDVRYLPADGVTSAGAEVVYGFNSARVNA |
| Ga0206125_100159284 | F049044 | AGGAG | MAYSTTAVAGGKGNFSLNQNFEVEGVDVTLLTVDFIVDVSAETGDLTTGSTTAGLQMVRHAFEHQGLRILAEGPLVDSDTQKTYMVRTDCLDSLSSTTTVAALQAYIRTLDQSSSSFPGVTADLTGATVTETKIGILTANAVS |
| Ga0206125_100159285 | F002093 | AGGAGG | MAYTGTLSAGGPGNFVTPNTAHSADGVEVKFITIDYINTMAAEITHQHASAAATAGLNLSMEAIQNQGVNILGKGALGNSNTEQTYMVRADAMDTISSTTTLAAIQAAIRALNALTPDIVTATISSATSNDEDMSDTAV |
| Ga0206125_100159287 | F073442 | N/A | MDLKSVNARKLRYILSVTSENENLPKSLCLLMTLASDTYFKKGVNIHVFIEHMQRNFILTDVMKTGNHIRLERFINLHSLTDQTFDLEGEYYTLHNYDLDNYDRKFAIIDCRAQNDRLKDNTEFYIELKKRCNLLHSQGFVFIKANPWESLDNINSQKQYPEIDLEHIKWTGDASWFWFYMYDKHKDKRFTFDHTNKKYDFLYLNKQPREHRAKLYSKLTSKDILSNSLYTNWPARKLPAAYELPWAQDYPRYGMDQDIFEKPYNDTACSIVSETNDNDFEVFMTEKIWKPIIAQQVFVVHGNYLYLQRLRDMGFKTFNSYFEEAYDLDKDPDTRINTIVDVCDRLREAPWQDIYLHTKALRKHNHDTFFNKEKLSLEIDKTLNLFLEFADSSQVSS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |