NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206125_10092512

Scaffold Ga0206125_10092512


Overview

Basic Information
Taxon OID3300020165 Open in IMG/M
Scaffold IDGa0206125_10092512 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1302
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031250Metagenome183Y
F057434Metagenome136N
F061908Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0206125_100925122F031250AGGAMEGIYNKENLFAEFAMQKTNADKVKFLQEMKQLKKDQPNMFRGTSITQKNFDNLIVEWSKDKPWYEINQEIKRRLKISNSVEGEDVSL
Ga0206125_100925123F057434N/AMLHLIYTRNNYDMDSVGGHFESHITLIRNVPYSHLSRLLVNKNDPELLKECDTKYFEYQESKGITDTCFHSEISIVDDEDYFKTYKDVYPDNYTISPGLIPAREDYFYDYGQKVNFMLIHDYDPNYTWFGKDWTQQMIDAEYKKRELDNQARV
Ga0206125_100925124F061908GGAGMNNRQIRLYNNMNKKEQEIFDHLVNVKNRKPDDVFFFLHSTFNPSRDDFKKPSFANLSTEQVTRTCQQLQLKDAA
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