NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206128_1000085

Scaffold Ga0206128_1000085


Overview

Basic Information
Taxon OID3300020166 Open in IMG/M
Scaffold IDGa0206128_1000085 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160426_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)114788
Total Scaffold Genes106 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (12.26%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002047Metagenome / Metatranscriptome599Y
F005243Metagenome / Metatranscriptome407Y
F006666Metagenome / Metatranscriptome367Y
F055007Metagenome / Metatranscriptome139Y
F059027Metagenome / Metatranscriptome134N

Sequences

Protein IDFamilyRBSSequence
Ga0206128_1000085104F002047N/AMKQKISLPEVVSKDRDALVSKGFLEFKENVYTMTPKALVICATLDSYFIKAKKKTDIQLMGKDFVEKINNYREVFPAKKLPSGKPARNNVKALGEAFRWFFETYDHTWEEIHKATRMYVNEYRDAGYMYMQTSQYFICKQDKHRVKHSTLADYCDMIVEGVSTEDEHFKENVV
Ga0206128_100008529F005243N/AMSNSKTNPNLQDADPKMSKEEMAARREEITEFYKENIPHLEIQADYEGLLAAIEKSRAERMQAQMFMAQQYASQKGEGQPDPNTEEGKAFQEAMVKAMQGETA
Ga0206128_100008532F006666N/AVNPKNHRDFKKGIADEVGVHPSVVDDFVSFYYAKVRKKLSTLAYPRINIDGLGTFYLRKNKLDKAILKNKSLLGNIAKRTYNGFAKSEDIQNNIVQMESAMLQLEQDIIRKKKFKNVKE
Ga0206128_100008543F059027N/AMAAPKQITKLKQQFESPAYDGVSRAETGNARLLHVNEVISWIRDVAVSSSYLDNAAAIAAGLKTGDIYHTAGLLKVVIPVVEEV
Ga0206128_100008548F055007N/AMANCAHCNKQFTCGCQKASLGNGVIVCKQCKTKAEADVSTSSNLNRELARQQIQDLRNK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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