NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206128_1005582

Scaffold Ga0206128_1005582


Overview

Basic Information
Taxon OID3300020166 Open in IMG/M
Scaffold IDGa0206128_1005582 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160426_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9328
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (5.56%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009608Metagenome / Metatranscriptome315Y
F105292Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0206128_10055826F105292N/AMKRVKLFESFINEAKVDKKYFDKVVKVLSKSKYPFTIMLVTKWNEIDIVIGYDAPDDISDDIDQRLTKAKLTWGGSSGISISGDSSNYSRREYDEIARINGGHKDY
Ga0206128_10055827F009608N/AMKHVKLFESFISEGRPFFQDTPNQLAYSDFKKWAYKKRGDIKKRLEDINDGSLFFIELKKIWKDWANKNAKQWSNIPSTQVAEKDFGRALASMMKSDNLIIKKTGNKITDLK
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Institute for Fundamental Biomedical Research
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