NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206128_1037429

Scaffold Ga0206128_1037429


Overview

Basic Information
Taxon OID3300020166 Open in IMG/M
Scaffold IDGa0206128_1037429 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160426_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2492
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (11.11%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005129Metagenome / Metatranscriptome411Y
F037230Metagenome / Metatranscriptome168Y
F045764Metagenome / Metatranscriptome152N
F061271Metagenome / Metatranscriptome132N

Sequences

Protein IDFamilyRBSSequence
Ga0206128_10374292F045764AGAAGMILDMQLTDEEIKEIADRMDDLMWEGFHDIVDDVYRQREDSSYDYEIWDEDIIKVRKELRKYI
Ga0206128_10374293F037230N/AMEDLTHYIEIDWSGICEDFDLDSGDISPEQSFEIDRALGNINEVLHKFIEQNKLKVHIGQTTLTSTEHNVLMVALDHMYEHLDDLVGDLETFEEENINLKRKDAVKSLKEMFNL
Ga0206128_10374295F061271N/AMIQELDKVVHQWCDDNDRWMYIEYDRDGIVMGLNFMQGDEYECFKKSWCVSDKGLTAFYKQMLYTFAYEQKNVPEHCFINSCMWAYHSAISEYEDNNCKIGNAKKCCKAISGR
Ga0206128_10374297F005129N/AMNYKVKIAEVNKSFSLSHHSYIDLGVFTVNASTYSFLYPAVKTDWACDINDTELEFLVNNKKCKYVGFKELYTQLYGNSFATFEADLIRQIEEEVAKNIIKEYPGTDVNF
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