Basic Information | |
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Taxon OID | 3300020167 Open in IMG/M |
Scaffold ID | Ga0194035_1000261 Open in IMG/M |
Source Dataset Name | Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L239-20m |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 32164 |
Total Scaffold Genes | 45 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 22 (48.89%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada |
Source Dataset Sampling Location | ||||||||
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Location Name | Canada: Ontario | |||||||
Coordinates | Lat. (o) | 49.663 | Long. (o) | -93.723 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F068580 | Metagenome | 124 | N |
F081044 | Metagenome | 114 | N |
F088504 | Metagenome | 109 | N |
Protein ID | Family | RBS | Sequence |
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Ga0194035_100026134 | F088504 | GGAGG | MTIYHLTTFMKTPEQLYAHQASLPPLRSYFIVWERPHGSYTWTQLGDMFTERDKANEFAKLRVDHKERPICDCVVSESKMARMPAPEGSEPVALLLSTNAEDEEKHAYPYYGKGHAR |
Ga0194035_100026135 | F068580 | AGG | VKIYKNTHKGAPLMDAIDEYASNYEKRKAVSRIDLWRWVKAHIAAKLRVPEKEVTDKDLAYFVRRMGVTYLIRQTYGMTTVTAEHMLLWANREDAQ |
Ga0194035_100026141 | F081044 | N/A | MTDAELAEEMHTLTNQFADAVRAALPDGVSSEEWEGAFRWALEKPDSVEVRAYAEKALAAATMAADREGMGR |
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