Scaffold Ga0194035

Basic Information
Taxon OID	3300020167 Open in IMG/M
Scaffold ID	Ga0194035_1001225 Open in IMG/M
Source Dataset Name	Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L239-20m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020167 Open in IMG/M

Scaffold ID

Ga0194035_1001225 Open in IMG/M

Source Dataset Name

Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L239-20m

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13728
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (40.74%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

13728

Total Scaffold Genes

27 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (40.74%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location
Location Name	Canada: Ontario
Coordinates	Lat. (^o)	49.663	Long. (^o)	-93.723	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Canada: Ontario

Coordinates

Lat. (^o)

49.663

Long. (^o)

-93.723

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001272	Metagenome / Metatranscriptome	733	Y
F002227	Metagenome	580	Y
F005388	Metagenome / Metatranscriptome	402	N
F015354	Metagenome / Metatranscriptome	255	Y
F029798	Metagenome / Metatranscriptome	187	N
F094803	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194035_100122514	F094803	AGGCGG	VGRKICNFLLSGGESDDQVRERSVNQGERIQALQSRRGWRTLRRMASLAGHWDEIRARYLAGEELSAIADDLGLVRMSVAARASRAGLPEIRRQMQIVCKEKKIESLESLSALVRSKLAADAIKTIERVDNYDLEGIKDESTREQILGSVAKRSALVFGWSDQSEAASISINLLGSMPDRMDNITLSSKTIEADTIE
Ga0194035_100122517	F005388	AGGA	MACPNVFNAFAVATESLAQDVYKRASYRSMWLNLIERGEYPQGTGLTQTSFTTTSIEPTAAETWSAITLASGVPTGDNGGACDVTYNDVPVGYNAVTWGPERFALKGPLLCKDDLTFDHRVEAFLRVYLEKLSVRAQRSWETRYQNVFAKYAIKAVADSSFTQTETIPAGVNEFPWADGVSTGQALNQSTSELTQEMLDVAAATLIRNGATNPDSSGFISYSSDGPVFPLYIGLEASQRIAQNNPAFRSDLNIADTGSGEGSTLLKRIGANRVIKNFRHVPNLFPPRFSYSGGKYTLVQPFTSASGTKGTVFSVNPTWTTAAYEGAFIVTPYVFKSHIVRPVNRVGDLAWMPTNYMGEWQWVTGAYKLSVDCADPLDKKGQHYAEFMHAPEPIFTNQGMTIIFRRCTGALTQIICS
Ga0194035_10012252	F002227	N/A	MKLTIQSTQNAQVIVDLFNAIITGNEAEGATPLSIYDDDKHICSLVGKSGEQILELIIEREVGDKLQEVGHPAPSPKSL
Ga0194035_100122520	F029798	N/A	MANLSCEDALTLINEAYGASCKSPRERVLLELGLLWEASTLGGTADITADNTVIDSSSTMITADMTEFI
Ga0194035_100122523	F001272	N/A	MIKIELTTEQANALMQLVDIAIKAGGYQNAKVAVPIADIILEAAKQSEETN
Ga0194035_100122525	F015354	N/A	MNAYFASLLRHVLTAAGGFLVAKGLVSSDQAGELVGAAVTASGVAWSIYNNKKNADAAGQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0194035_1001225

Overview

Ecosystem & Geography

Associated Families

Sequences