NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194035_1032668

Scaffold Ga0194035_1032668


Overview

Basic Information
Taxon OID3300020167 Open in IMG/M
Scaffold IDGa0194035_1032668 Open in IMG/M
Source Dataset NameAnoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L239-20m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1884
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Ontario
CoordinatesLat. (o)49.663Long. (o)-93.723Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000325Metagenome / Metatranscriptome1296Y
F008812Metagenome / Metatranscriptome327Y
F053106Metagenome / Metatranscriptome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0194035_10326684F008812AGGAMIQWIGVVIAVLGLAYNGIKDYQKGDIKISRLPQKQVLTKITYPVQYCLMAYDPNLNKVFYLHDNGQWHDYAPEQRRYPSSSQHYQDQGQAVLANRNGTQRESFGHYVR
Ga0194035_10326685F053106GGAGMGKYYIRSNTLQITLSKKDVLEAAISGFLLTNKFDTLDEYFYIDERGYRDYISADKETKVIQTKSIVRAAWRELSKEDDE
Ga0194035_10326687F000325N/ACYAEQTEKMYPNVRPAGMMNLITEKNRIRAMILEAIRKEKSIRWHERGDWFLNGQLDLDYVANVTWACESILADGTELPDMWFYTHIYDDRLVSLEKYMNVYASVHNDKDMGEALAQGFKKFAWCDSDEKIAPKRPRSKTKVAEWRKSLPKLVVLNGTKFVTCPEIRRGRGVVTCTPTEGSVSCDMCVKGLANVLFPSH
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