NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194035_1046739

Scaffold Ga0194035_1046739


Overview

Basic Information
Taxon OID3300020167 Open in IMG/M
Scaffold IDGa0194035_1046739 Open in IMG/M
Source Dataset NameAnoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L239-20m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1510
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Ontario
CoordinatesLat. (o)49.663Long. (o)-93.723Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029433Metagenome188Y
F048984Metagenome147N
F051116Metagenome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0194035_10467393F029433GAGMDYEVTSNRLNGHSRGDIIREADLGGLTTDLLFLVEAGHLSPLKIKKSAKTIDTDAKD
Ga0194035_10467394F048984AGGMAAQTYTDLFNTAINNLATTLNAVSGLVCITDPRNVQAPCILLDAMSFTAFNANIVDISVPVTVISLGPSNADAYRNALNVAAKVLTAKVAVTDGRPTTLTIGGVDYPALSLNIQMKAST
Ga0194035_10467395F051116N/ALGIATATADDTTFVTQCASAANNFIYRRRQECGYFDSLTTSPGADCTLGTIMYGGALYRQRGGISDFASFDGMSAGSTNGLSPLVKQLIGVDRPQVA
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