NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206127_1030524

Scaffold Ga0206127_1030524


Overview

Basic Information
Taxon OID3300020169 Open in IMG/M
Scaffold IDGa0206127_1030524 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160419_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3110
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033809Metagenome / Metatranscriptome176N
F054046Metagenome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0206127_10305244F054046N/AMTIEITKEAARKLIGNADETWQDFKQDELSETTFYHGYGVNIQAIHNWISGVTQYYVTDINA
Ga0206127_10305246F033809GGAGGMSEELQLNTKNFITKKLRDAQEATGQNRAWCVREPKKWALVAQHIIQKPNGVSEFLRNNKITRNFYYDVQTELLADPESSEIRNAWASEISSVLFQGLDTYRKAQDKYTDRVESGDIEIDGNELFKQGKSLQAFNDIHSKLTGNNIQRHVVEHKTTLDEAEEYARKMLQGIQEVEIVD
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