NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206127_1037115

Scaffold Ga0206127_1037115


Overview

Basic Information
Taxon OID3300020169 Open in IMG/M
Scaffold IDGa0206127_1037115 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160419_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2679
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015117Metagenome / Metatranscriptome257Y
F066645Metagenome / Metatranscriptome126N

Sequences

Protein IDFamilyRBSSequence
Ga0206127_10371152F015117GAGGMAKHTMDMVLEYPKVFEENRDMGGDKNSAAKKAAMHNGQYVVNAYFTSEEQIEELLQAGMDPKPLGNDRVKEGNSFGIGKFVKLTRMHDHKMTFSDNNGKETEVDFGGAPKVVNLTNGAENKTWWSLEEDGELGNGTRAKVQFETYSNGAGLRLLAVGVTDHVSYEGASPSEDDELFMVD
Ga0206127_10371153F066645GGTGGMRVDINFYYDKEEDGIEGSSSASRDGVFDLYTMSQFLADAMRGAGYSYVTDVGFEKDDGTVIFGEM
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