NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206127_1171199

Scaffold Ga0206127_1171199


Overview

Basic Information
Taxon OID3300020169 Open in IMG/M
Scaffold IDGa0206127_1171199 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160419_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)817
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002915Metagenome / Metatranscriptome521Y
F073140Metagenome / Metatranscriptome120N
F098743Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0206127_11711991F073140N/ASNLHTKPYGCHFMSNNKWLSMYYYLVYKDEGLGCLWESSNPNVRIKYTVTLKTFVIAPEQGRCILGD
Ga0206127_11711992F002915AGGMKRLLLLSLIVPIIALGKEVFTNDQGLKIEYDKPSVSCFYYKDAYEGYLNTCLMLPNYETCAQTKYENYICSDQNMIKQLEKKAKEAG
Ga0206127_11711993F098743N/AMKYLILICFISAITTCAMAQDTSSEFYIPSESNAYQGRLIYDASKEDYPIDKMIKLCEPYTGIDTA
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