NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206127_1300026

Scaffold Ga0206127_1300026


Overview

Basic Information
Taxon OID3300020169 Open in IMG/M
Scaffold IDGa0206127_1300026 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160419_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)534
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016661Metagenome245Y
F095309Metagenome105N

Sequences

Protein IDFamilyRBSSequence
Ga0206127_13000261F095309AGGMNYSEYRNKLRMLSAKYNEAYKKYGWGADTTRKLRQQKIDLRAKYAVHSFDYAVESLTSKGIL
Ga0206127_13000262F016661GAGGMNYNAERYLALKRYELEVKRDKIRALLWNVSIGGIYAMVVIQVFTGVIS

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