NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0179594_10004711

Scaffold Ga0179594_10004711


Overview

Basic Information
Taxon OID3300020170 Open in IMG/M
Scaffold IDGa0179594_10004711 Open in IMG/M
Source Dataset NameVadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3410
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051337Metagenome / Metatranscriptome144N
F062633Metagenome / Metatranscriptome130N

Sequences

Protein IDFamilyRBSSequence
Ga0179594_100047113F062633N/AMYLPLASKGLKTYPGLPGTALAVGNMGSVEEEVSGDGEELGFTCELLFVVLDAPPRLLIAAAAADFLSGTKRTETGFGYRELYAPLTASTPTPIGPPAIMAVPPVADTLLSTFTVWGTYPALLTVTVKLSRRLFTNVVGVTPFSPEESTTFAPDGSLNTVSLSWEPRVMVAQDVIRTTGRHSKTLLINRSIVVELEKNISDFGSVPISWQIFV
Ga0179594_100047116F051337N/ATKAGKFWMELATIPVPADNGLAQYYTEEASGLFRARISQPVKNGTVTVTPLVSRGRPDRPDRTKVV
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