NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0179594_10294935

Scaffold Ga0179594_10294935


Overview

Basic Information
Taxon OID3300020170 Open in IMG/M
Scaffold IDGa0179594_10294935 Open in IMG/M
Source Dataset NameVadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)614
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005616Metagenome / Metatranscriptome395N
F071477Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0179594_102949351F071477N/AMGMPASFQWARLKADVKCALRKGAWYRILKLTSSDVVLDVR
Ga0179594_102949352F005616N/AMTPDVADRLRGEPLDFRIPRTGDRDLAFRGWLLSHAEERGGSAALTYGLDIDIYLTIRLRLAGHLCHWSLREGQGLREEHRVAVHDSAAELLGWLKQENAGRLDAPSKRAWVRACQVWPGLKREAVERVD

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