NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0180732_1000243

Scaffold Ga0180732_1000243


Overview

Basic Information
Taxon OID3300020171 Open in IMG/M
Scaffold IDGa0180732_1000243 Open in IMG/M
Source Dataset NameGroundwater microbial communities from the Olkiluoto Island deep subsurface site, Finland - KR11_0.1 MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)52148
Total Scaffold Genes67 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)66 (98.51%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Groundwater Microbial Communities From Three Deep Subsurface Sites In Europe

Source Dataset Sampling Location
Location NameFinland: Olkiluoto Island
CoordinatesLat. (o)61.2413Long. (o)21.4947Alt. (m)Depth (m)420
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034978Metagenome173Y
F039402Metagenome / Metatranscriptome164Y

Sequences

Protein IDFamilyRBSSequence
Ga0180732_10002435F034978AGGMEQVQIRATVDQLEEFKESILWADITEELSAWKEGFNREMMAIVDDAEGKNPSTASVLLHMGDLNGRQKAVDYFLSLPDVFLDLLKTRLEEKKDGRNKTD
Ga0180732_100024350F039402AGGAGMSLVDYSSMEKEIAEAPEPTIITKGTEVKARIIGVNSGVSEKNFATWYMPRFDVPAEPNSKEFNAFFWDLADLSKLEPKQAAGALRDFKNFAACFGLDYSKPFDWEDSLFGLEGWIIVGVGKDTGFGIQNNVSKYLNRGGATTAQSTEGAPF
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Institute for Fundamental Biomedical Research
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