Scaffold Ga0180732_1175514

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0180732_1175514

Scaffold Ga0180732_1175514

Overview

Basic Information
Taxon OID	3300020171 Open in IMG/M
Scaffold ID	Ga0180732_1175514 Open in IMG/M
Source Dataset Name	Groundwater microbial communities from the Olkiluoto Island deep subsurface site, Finland - KR11_0.1 MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	643
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Groundwater Microbial Communities From Three Deep Subsurface Sites In Europe

Source Dataset Sampling Location
Location Name	Finland: Olkiluoto Island
Coordinates	Lat. (^o)	61.2413	Long. (^o)	21.4947	Alt. (m)		Depth (m)	420
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F075675	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0180732_11755142	F075675	GGGGG	MKTTEIPVYCWHCGKRFYIEIANVTAGRLFCSDKCREENLKEEIKLNKEKGRKLNNGD

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