NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211729_10092549

Scaffold Ga0211729_10092549


Overview

Basic Information
Taxon OID3300020172 Open in IMG/M
Scaffold IDGa0211729_10092549 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6732
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (78.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002343Metagenome / Metatranscriptome568Y
F003540Metagenome480Y
F006062Metagenome382Y

Sequences

Protein IDFamilyRBSSequence
Ga0211729_1009254911F006062GAGMKRIFPRGTRPDAMASVVARMVSNLDPLKTWAVEVTEWRRPRTNQQNKFLWGVVYPSIIEGGGEALRGWNRDDLHDYFLGECFGWETLEGFGRKRMRPLKRSSALNKQEFSDYLLFLETKCMDMGIVIPEPSYEPA
Ga0211729_100925492F002343GGAGMSDITLTLTLEEAVALTNLVGSLPTAQGAYPLFQKLKSQVEPHLPNEKEAKQ
Ga0211729_100925495F003540GGAGGVNKPGFNMEKAVSMLFPILLAAVAWLLGQISSFQSRLISIESKIPILITEGGVIIDSPQSAAARQEMKDDLIKHIHDLQVRVKLMEERNK
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