NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211729_10252871

Scaffold Ga0211729_10252871


Overview

Basic Information
Taxon OID3300020172 Open in IMG/M
Scaffold IDGa0211729_10252871 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2590
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013413Metagenome271N
F014620Metagenome261N
F055728Metagenome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0211729_102528715F055728GGCGGMRRGYDPAWGSREQLRAQSEHGMKVARERDALKKENAELLEQITELKAMIAYITEGK
Ga0211729_102528716F014620N/AMFAPSIGLGGTFERPAINREIVVIAREAKQTSVDAALKAKPKTGKKRQRVHAYLLGRPATDEEIEIALNMSGNTVRPTRGTLVKDGHVIDSGLRRLTRAGNEAIVWRCV
Ga0211729_102528717F013413N/AEHQETLRRMQEFRLIGEQISKIPETPKHVLEIEVRYLMGIISELEARVKELESEARRLEMLLTRAN
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